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1

[Methods in Molecular Biology] Bacterial Chromatin Volume 1837 (Methods and Protocols) ||

Year:

2018

Language:

english

File:

PDF, 14.65 MB

english, 2018

2

[Methods in Molecular Biology] Bacterial Chromatin Volume 1837 (Methods and Protocols) || Genomic SELEX Screening of Regulatory Targets of Escherichia coli Transcription Factors

Year:

2018

Language:

english

File:

PDF, 940 KB

english, 2018

3

The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin

Journal:

Molecular Microbiology

Year:

2005

Language:

english

File:

PDF, 260 KB

english, 2005

4

A physical approach to segregation and folding of the Caulobacter crescentus genome

Remus T. Dame, Mariliis Tark-Dame, Helmut Schiessel

Journal:

Molecular Microbiology

Year:

2011

Language:

english

File:

PDF, 79 KB

english, 2011

5

Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation

Dame, Remus T., Noom, Maarten C., Wuite, Gijs J. L.

Journal:

Year:

2006

Language:

english

File:

PDF, 3.14 MB

english, 2006

6

Bacterial Chromatin Volume 869 || Archaeal Chromatin Organization

Dame, Remus T., Dorman, Charles J.

Year:

2010

Language:

english

File:

PDF, 741 KB

english, 2010

7

H-NS promotes looped domain formation in the bacterial chromosome

Maarten C. Noom, William W. Navarre, Taku Oshima, Gijs J.L. Wuite, Remus T. Dame

Journal:

Current Biology

Year:

2007

Language:

english

File:

PDF, 146 KB

english, 2007

8

Cascade-mediated binding and bending of negatively supercoiled DNA

Westra, Edze R., Nilges, Benedikt, van Erp, Paul B. G., van der Oost, John, Dame, Remus T., Brouns, Stan J. J.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.20 MB

english, 2012

9

Bacterial Chromatin Volume 1096 || The Topology and Organization of Eukaryotic Chromatin

Dame, Remus T., Dorman, Charles J.

Year:

2010

Language:

english

File:

PDF, 848 KB

english, 2010

10

The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: A molecular perspective

Martijn S. Luijsterburg, Maarten C. Noom, Gijs J.L. Wuite, Remus Th. Dame

Journal:

Journal of Structural Biology

Year:

2006

Language:

english

File:

PDF, 1.09 MB

english, 2006

11

HU: promoting or counteracting DNA compaction?

Remus Thei Dame, Nora Goosen

Journal:

Year:

2002

Language:

english

File:

PDF, 254 KB

english, 2002

12

Structural basis for preferential binding of H-NS to curved DNA

Remus Thei Dame, Claire Wyman, Nora Goosen

Journal:

Year:

2001

Language:

english

File:

PDF, 73 KB

english, 2001

13

Homologous recombination is facilitated in starving populations of Pseudomonas putida by phenol stress and affected by chromosomal location of the recombination target

Kairi Tavita, Katren Mikkel, Mariliis Tark-Dame, Hansjoerg Jerabek, Riho Teras, Julia Sidorenko, Radi Tegova, Andres Tover, Remus T. Dame, Maia Kivisaar

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

14

On the Role of H-NS in the Organization of Bacterial Chromatin: From Bulk to Single Molecules and Back…

Dame, Remus Thei, Wuite, Gijs J.L.

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 79 KB

english, 2003

15

Unravelling The Role Of Alba In The Organization Of The Archaeal Nucleoid

Noom, Maarten C., Hol, Felix J.H., Laurens, Niels, White, Malcolm F., Dame, Remus T., Wuite, Gijs J.L.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 36 KB

english, 2009

16

Protein-Mediated Molecular Bridging: A Key Mechanism in Biopolymer Organization

Wiggins, Paul A., Dame, Remus Th., Noom, Maarten C., Wuite, Gijs J.L.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 576 KB

english, 2009

17

Investigating the Interaction of Single UvrA Dimers with DNA Using a Combination of Fluorescent Microscopy and Optical Tweezers

Biebricher, Andreas, Wagner, Koen, Moolenaar, Geri F., Goosen, Nora, Dame, Remus T., Peterman, Erwin J.G., Wuite, Gijs J.L.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 41 KB

english, 2011

18

Predicting the Effect of Ions on the Conformation of the H-NS Dimerization Domain

Vreede, Jocelyne, Dame, Remus Th.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 1.38 MB

english, 2012

19

Multidisciplinary perspectives on bacterial genome organization and dynamics

Dame, Remus T., Espéli, Olivier, Grainger, David C., Wiggins, Paul A.

Journal:

Molecular Microbiology

Year:

2012

Language:

english

File:

PDF, 90 KB

english, 2012

20

The Major Architects of Chromatin: Architectural Proteins in Bacteria, Archaea and Eukaryotes

Luijsterburg, Martijn S., White, Malcolm F., van Driel, Roel, Dame, Remus Th.

Journal:

Critical Reviews in Biochemistry and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 651 KB

english, 2008

21

Structure and dynamics of the crenarchaeal nucleoid

Driessen, Rosalie P.C., Dame, Remus Th.

Journal:

Biochemical Society Transactions

Year:

2013

Language:

english

File:

PDF, 219 KB

english, 2013

22

Bacterial Chromatin || The Chromosome Segregation Machinery in Bacteria

Dame, Remus T., Dorman, Charles J.

Year:

2010

Language:

english

File:

PDF, 771 KB

english, 2010

23

Bacterial Chromatin || Dps and Bacterial Chromatin

Dame, Remus T., Dorman, Charles J.

Year:

2010

Language:

english

File:

PDF, 839 KB

english, 2010

24

Bacterial Chromatin || Transcriptional Regulation by Nucleoid-Associated Proteins at Complex Promoters in Escherichia coli

Dame, Remus T., Dorman, Charles J.

Year:

2010

Language:

english

File:

PDF, 1.43 MB

english, 2010

25

Single-Molecule Unzipping Force Analysis of HU-DNA Complexes

Dame, Remus T., Hall, Michael A., Wang, Michelle D.

Journal:

Year:

2013

Language:

english

File:

PDF, 900 KB

english, 2013

26

The archaellum: a rotating type IV pilus

Shahapure, Rajesh, Driessen, Rosalie P.C., Haurat, M. Florencia, Albers, Sonja-Verena, Dame, Remus Th.

Journal:

Molecular Microbiology

Year:

2014

Language:

english

File:

PDF, 937 KB

english, 2014

27

Unravelling the Role of Alba in the Organization of the Archaeal Nucleoid

Dame, Remus T., Laurens, Niels, Noom, Maarten C., Hol, Felix J.H., White, Malcolm F., Wuite, Gijs J.L.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

28

Protein mediated bridging motifs: A key mechanism in biopolymer organization

Wiggins, Paul A., Dame, Remus Th, Noom, Maarten C., Wuite, Gijs J.L.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 38 KB

english, 2009

29

Changing patterns of international competition

Wiggins, Paul A., Dame, Remus Th, Noom, Maarten C., Wuite, Gijs J.L.

Journal:

Journal of Product Innovation Management

Year:

1986

Language:

english

File:

PDF, 115 KB

english, 1986

30

The Architects of the Archaeal Chromatin

Driessen, Rosalie, van der Valk, Ramon, Moolenaar, Geri, Goosen, Nora, Dame, Remus

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 62 KB

english, 2013

31

Probing the Unbinding Kinetics of DNA-H-NS-DNA Protein Complexes by a High-Speed and High-Throughput Single-Molecule Pulling Assay using Atomic Force Microscopy

Liang, Yan, Baclayon, Marian, van der Valk, Ramon, Th Dame, Remus, Roos, Wouter H., Wuite, Gijs J.L.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 44 KB

english, 2014

32

Archaeal DNA Organization: The Mechanism of Alba I & II Revealed

Laurens, Niels, Vorselen, Daan, Driessen, Rosalie P.C., Noom, Maarten C., Hol, Felix J.H., White, Malcolm F., Dame, Remus T., Wuite, Gijs J.L.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 35 KB

english, 2011

33

Nucleoid-associated proteins in Crenarchaea

Driessen, Rosalie P.C., Dame, Remus Th.

Journal:

Biochemical Society Transactions

Year:

2011

Language:

english

File:

PDF, 392 KB

english, 2011

34

Effect of Temperature on the Intrinsic Flexibility of DNA and Its Interaction with Architectural Proteins

Driessen, Rosalie P. C., Sitters, Gerrit, Laurens, Niels, Moolenaar, Geri F., Wuite, Gijs J. L., Goosen, Nora, Dame, Remus Th.

Journal:

Year:

2014

Language:

english

File:

PDF, 789 KB

english, 2014

35

Bacterial Chromatin || H-NS as a Defence System

Dame, Remus T., Dorman, Charles J.

Year:

2010

Language:

english

File:

PDF, 1.48 MB

english, 2010

36

The interplay between nucleoid organization and transcription in archaeal genomes

Peeters, Eveline, Driessen, Rosalie P. C., Werner, Finn, Dame, Remus T.

Journal:

Nature Reviews Microbiology

Year:

2015

Language:

english

File:

PDF, 421 KB

english, 2015

37

Bacterial Chromatin ||

Dame, Remus T., Dorman, Charles J.

Year:

2010

Language:

english

File:

PDF, 15.73 MB

english, 2010

38

Alba shapes the archaeal genome using a delicate balance of bridging and stiffening the DNA

Laurens, Niels, Driessen, Rosalie P.C., Heller, Iddo, Vorselen, Daan, Noom, Maarten C., Hol, Felix J.H., White, Malcolm F., Dame, Remus T., Wuite, Gijs J.L.

Journal:

Nature Communications

Year:

2012

Language:

english

File:

PDF, 1.61 MB

english, 2012

39

Genomic Looping: A Key Principle of Chromatin Organization

van der Valk, Ramon A., Vreede, Jocelyne, Cr�mazy, Fr�d�ric, Dame, Remus T.

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2015

Language:

english

File:

PDF, 383 KB

english, 2015

40

Bacterial Chromatin || Nucleoid-Associated Proteins: Structural Properties

Dame, Remus T., Dorman, Charles J.

Year:

2010

Language:

english

File:

PDF, 1.45 MB

english, 2010

41

E. coli Fis Protein Insulates the cbpA Gene from Uncontrolled Transcription

Chintakayala, Kiran, Singh, Shivani S., Rossiter, Amanda E., Shahapure, Rajesh, Dame, Remus T., Grainger, David C., Burkholder, William F.

Journal:

Year:

2013

Language:

english

File:

PDF, 835 KB

english, 2013

42

Chromosomal Macrodomains and Associated Proteins: Implications for DNA Organization and Replication in Gram Negative Bacteria

Dame, Remus T., Kalmykowa, Olga J., Grainger, David C., Burkholder, William F.

Journal:

Year:

2011

Language:

english

File:

PDF, 459 KB

english, 2011

43

Bacterial chromatin: converging views at different scales

Dame, Remus T, Tark-Dame, Mariliis

Journal:

Current Opinion in Cell Biology

Year:

2016

Language:

english

File:

PDF, 1.82 MB

english, 2016

44

Resolving the Kinetic States of a Proofreading DNA Polymerase

Lin, Szu-Ning, Cabanas Danes, Jordi, Hoekstra, Tjalle P., Kamsma, Douwe, Sitters, Gerrit, Depken, Martin, Dame, Remus T., Wuite, Gijs

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 44 KB

english, 2015

45

How Does the Replication Machinery Deal with Roadblocks: A Single-Molecule Investigation

Monachino, Enrico, van der Valk, Ramon A., Jergic, Slobodan, Dixon, Nicholas E., Dame, Remus Th, van Oijen, Antoine M.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

46

Single-molecule micromanipulation studies of DNA and architectural proteins

Dame, Remus Th.

Journal:

Biochemical Society Transactions

Year:

2008

Language:

english

File:

PDF, 262 KB

english, 2008

47

Switching between Exonucleolysis and Replication by T7 DNA Polymerase Ensures High Fidelity

Hoekstra, Tjalle P., Depken, Martin, Lin, Szu-Ning, Cabanas-Danés, Jordi, Gross, Peter, Dame, Remus T., Peterman, Erwin J.G., Wuite, Gijs J.L.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 1.10 MB

english, 2017

48

The Interplay between a Bacterial Chromatin Protein and DNA Polymerase

Lin, Szu-Ning, Dame, Remus T., Wuite, Gijs J.L.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 41 KB

english, 2017

49

Probing the mechanical stability of bridged DNA-H-NS protein complexes by single-molecule AFM pulling

Liang, Yan, van der Valk, Ramon A., Dame, Remus T., Roos, Wouter H., Wuite, Gijs J. L.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.97 MB

english, 2017

50

The organization of bacterial genomes: Towards understanding the interplay between structure and function

Brocken, Daan J.W., Tark-Dame, Mariliis, Dame, Remus T.

Journal:

Current Opinion in Systems Biology

Year:

2018

Language:

english

File:

PDF, 663 KB

english, 2018